If in Windows 7 or up a program doesn't have sufficient rights, then windows will store changes in the Virtual Store.
"%LocalAppData%\VirtualStore" and deeper ("C:\Users\%username%\Appdata\Local\VirtualStore\Program Files (x86)\Condor" for example). Just add the folders in a Library and you will get there fast. You can copy-paste those Links in you Explorer BTW.
Other options are to install Condor outside the Program Files folder or run Condor as an Admin. Or give your current user an admin status.
My advice is just to use a Library link. But you are free to choose what you want...https://technet.microsoft.com/en-us/library/ee449413(v=ws.10).aspxhttp://www.howtogeek.com/howto/10283/understanding-the-libraries-feature-in-windows-7/